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yes that was happening to me... i've done many EF B16 swaps and only had this problem with the hfs... on the si's and DX's that i've done i haven't had this problem... also the hf's that i've done were 89 and 88...so i'm unsure about 90+....
I imagine the ECU will throw a code for an open circuit...i.e.-disconnecting it.
mine did the same check the wiring of these items as well as putting a volt/ohms meter on the sensors to check them if their broken ect is mostliky broke mine was as for the knock sensor its a cheap sensor replace it any way better be safe then sorry... plug ur speed cable back in for the 17 code to go away and reset the ecu after fixing this and see